knowledgesystems / pipelines-scrum

Repository for tracking uncategorizable issues related to backend pipelines work
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Investigate AZ sample with missing gene panel #1271

Closed callachennault closed 2 months ago

callachennault commented 2 months ago

Done Condition (What do we need? Why do we need it? Keep this is small as possible!)

Sample ID: P-0091937-T03-IM7 Summary: Ambar from AstraZeneca reached out about an issue in last week's data delivery containing a sample with no gene panel. I traced it through our data and the sample is present in msk_solid_heme, its entry in data_clinical_sample.txt has no data other than sample ID and patient ID: P-0091937-T03-IM7 P-0091937 This entry used to have data - Mar 28 commit hash 6208f39623297eaf5b4a6274ea960910836a66fe (msk-impact repo) is when it lost the data. There were several failures the night before this commit on Mar 27. I wasn't able to requeue the sample successfully and can't find it on the masterlists for any of the cohorts.

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