ao508
commented
3 years ago Initial findings:
1. Study summary "Genomic Profile Samples Count" : "Molecular Profile" table populates on a matching stable id pattern and has some sort of conditional logic where "if mutations profile exists then also display fusion" going on.
MSKARCHER: If stable id is "mskarcher_mutations" then the fusions profile shows up in the study summary table because the profile is imported as "mutations" with genetic alteration type "MUTATION_EXTENDED" and datatype "FUSION".
MSKIMPACT Shows both mutations and fusions profiles and has both "mskimpact_mutations" and "mskimpact_fusion" genomic profiles.
2. "Study summary "Structural Variant Genes" table likely populates based on whether a genomic profile exists with genetic alteration type "STRUCTURAL_VARIANT".
MSKARCHER: If stable id is "mskarcher_mutations" and genetic alteration type = "STRUCTURAL_VARIANT" then Structural Variant genes table cannot be selected under charts.
When stable id is "msarkcher_fusion" and genetic alteration type = "STRUCTURAL_VARIANT" you can select the "Structural Variant" genes table from the charts but it doesn't display anything.
Initial plan:
- Look into how "Genomic Profile Samples Count" : "Molecular Profile" table is populated
- Look into how "Structural Variant" genes table is populated
Done Condition (What do we need? Why do we need it? Keep this is small as possible!)
Archer Cohort is missing fusions data -- done condition is that the data is available.
Technical Description (How are we going to achieve the above)
Will need to debug -- reason for missing data is not clear yet. Could be related to how it's imported or if there's a workaround that doesn't work.
Potential Issues
Dependencies
Technical Requirements
Outside People/Teams
Changes