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knowmics-lab / RNAdetector

RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
https://rnadetector.atlas.dmi.unict.it/index.html
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circRNA analysis pipeline doesn't work #19

Closed m-kouhsar closed 2 years ago

m-kouhsar commented 3 years ago

Hi

I tried to use you software to extract circRNA expression from paired end RNA-Seq data (my OS is linux). I followed the steps in Circular RNA analysis but in final step when I press the "START ANALYSIS" button nothing happens! and the pipeline don't start and don't add to jobs!

alaimos commented 3 years ago

Can you send us more details of the analysis you are running? For example, screenshots of all the steps for the circ-RNA analysis filled with the parameters would be helpful to identify what is happening.

m-kouhsar commented 3 years ago

The screenshot of all process is attached. I tried to run CIRIquant algorithm on a pared end sample. The sample was downloaded from CIRIquant home page

RNADetectror1 RNADetectror2 RNADetectror3 RNADetectror4 RNADetectror5 ).

alaimos commented 3 years ago

Thank you for the screenshots. Did you download only the hg19 genome? In any case, I will look into the problem and let you know as soon as I have more details.

m-kouhsar commented 3 years ago

Yeah, I downloaded only the h19 genome.

alaimos commented 3 years ago

I just released a new update that should fix your problem. Let me know if everything now works when you can download and install the patched version (version number is still 0.0.4).

Thanks.

alaimos commented 2 years ago

Closed since no other comments have been received.