Starting job.
Extracting /rnadetector/ws/storage/app/public/jobs/15/hg38.fa.gz
Indexing reference for STAR.
Oct 04 13:22:14 ..... started STAR run
Oct 04 13:22:14 ... starting to generate Genome files
Oct 04 13:24:15 ... starting to sort Suffix Array. This may take a long time...
Oct 04 13:24:56 ... sorting Suffix Array chunks and saving them to disk...
/rnadetector/scripts/star_index.sh: line 67: 377 Killed STAR --runThreadN "$THREADS" --runMode genomeGenerate $OTHER_ARGS --genomeDir "$REFERENCE_DIR" --genomeFastaFiles "$FASTA_FILE"
An error occurred during indexing!
Reference sequence indexed for STAR.
Job completed!
Could anyone help me resolve this problem? Your time and effort will be greatly appreciated!
Thank you very much.
Starting job. Extracting /rnadetector/ws/storage/app/public/jobs/15/hg38.fa.gz Indexing reference for STAR. Oct 04 13:22:14 ..... started STAR run Oct 04 13:22:14 ... starting to generate Genome files Oct 04 13:24:15 ... starting to sort Suffix Array. This may take a long time... Oct 04 13:24:56 ... sorting Suffix Array chunks and saving them to disk... /rnadetector/scripts/star_index.sh: line 67: 377 Killed STAR --runThreadN "$THREADS" --runMode genomeGenerate $OTHER_ARGS --genomeDir "$REFERENCE_DIR" --genomeFastaFiles "$FASTA_FILE" An error occurred during indexing! Reference sequence indexed for STAR. Job completed!
Could anyone help me resolve this problem? Your time and effort will be greatly appreciated! Thank you very much.