kocherlab / HalictidCompGen

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Error when running selection_pipeline.py #3

Open aaannaw opened 1 month ago

aaannaw commented 1 month ago

Hello, professor We got the uploaded halictids.params file, which displayed the cds file path for every species. I am trying to use the script selection_pipeline.py to filter my orthogroups fgenerated orthofinder software. However, I got the error: image Because I did not find your orthogroups.txt in the website and I used the my orthogroups.txt generated by orthofinder like this: image And my halictids.params file is like this: image Could you give me any suggestions? Best wishes, Na Wan

aaannaw commented 1 month ago

Hello, professor Could you upload the cds.fa for every species in the uploaded halictids.params file.
Best wishes! Na Wan