Issues with LIF and TIF when processing as dask.array

koenderinklab / OpenDDM

https://koenderinklab.github.io/OpenDDM/

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Issues with LIF and TIF when processing as dask.array #35

Open mwakok opened 2 years ago

mwakok commented 2 years ago

Calculating the AB fit for LIF and TIF files imported as dask.arrays is producing errors, because they are first loaded as numpy arrays. We should look into lazily loading the data and skipping the numpy import step:

https://blog.dask.org/2019/06/20/load-image-data