Create synthetic data to test the analysis

koenderinklab / OpenDDM

https://koenderinklab.github.io/OpenDDM/

Apache License 2.0

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Create synthetic data to test the analysis #38

Closed mwakok closed 2 years ago

mwakok commented 2 years ago

We could generate a dataset of 2D diffusion of particles.

This package might be useful: https://schuetzgroup.github.io/sdt-python/sim.html

mwakok commented 2 years ago

I have created a workflow to generate simulated images of particles undergoing 2D Brownian motion in /ddm/simulation.py.

The scripts can be called from the CLI with python ddm/simulation.py or interactively accessed via tutorial/simulation_data.ipynb. The workflow will create a .tif image stack.