konradjk / exac_browser

Browser for ExAC consortium data
http://exac.broadinstitute.org
MIT License
106 stars 54 forks source link

TypeError: 'NoneType' object is not iterable #339

Open smhaider opened 6 years ago

smhaider commented 6 years ago

after running python manage.py load_db it loaded the database for like 2 days and after loading I got this error. can you please let me know what would be the reason of it?

Done loading genes. Took 161925 seconds Loaded 2400000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (161951 seconds) Done indexing gene table. Took 52 seconds Done loading transcripts. Took 20 seconds Loaded 2500000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162005 seconds) Done indexing transcript table. Took 35 seconds Loaded 2500000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162113 seconds) Done loading exons. Took 129 seconds Loaded 2600000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162203 seconds) Loaded 2600000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162441 seconds) Loaded 2700000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162582 seconds) Done indexing exon table. Took 421 seconds Started 0 processes to run load_gene_models Dropped db.constraint. Done loading constraint info. Took 90 seconds Traceback (most recent call last): File "manage.py", line 80, in manager.run() File "/home/syedhaider/exac/exac_env/local/lib/python2.7/site-packages/flask_script/init.py", line 366, in run raise e TypeError: 'NoneType' object is not iterable Loaded 2700000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162700 seconds) Finished loading subset 0 from ExAC_HC.0.3.final.vep.vcf.gz (2793615 records) Loaded 2800000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162815 seconds) Loaded 2900000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162914 seconds) Finished loading subset 2 from ExAC_HC.0.3.final.vep.vcf.gz (2998287 records)