after running python manage.py load_db it loaded the database for like 2 days and after loading I got this error. can you please let me know what would be the reason of it?
Done loading genes. Took 161925 seconds
Loaded 2400000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (161951 seconds)
Done indexing gene table. Took 52 seconds
Done loading transcripts. Took 20 seconds
Loaded 2500000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162005 seconds)
Done indexing transcript table. Took 35 seconds
Loaded 2500000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162113 seconds)
Done loading exons. Took 129 seconds
Loaded 2600000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162203 seconds)
Loaded 2600000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162441 seconds)
Loaded 2700000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162582 seconds)
Done indexing exon table. Took 421 seconds
Started 0 processes to run load_gene_models
Dropped db.constraint.
Done loading constraint info. Took 90 seconds
Traceback (most recent call last):
File "manage.py", line 80, in
manager.run()
File "/home/syedhaider/exac/exac_env/local/lib/python2.7/site-packages/flask_script/init.py", line 366, in run
raise e
TypeError: 'NoneType' object is not iterable
Loaded 2700000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162700 seconds)
Finished loading subset 0 from ExAC_HC.0.3.final.vep.vcf.gz (2793615 records)
Loaded 2800000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162815 seconds)
Loaded 2900000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162914 seconds)
Finished loading subset 2 from ExAC_HC.0.3.final.vep.vcf.gz (2998287 records)
after running python manage.py load_db it loaded the database for like 2 days and after loading I got this error. can you please let me know what would be the reason of it?
Done loading genes. Took 161925 seconds Loaded 2400000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (161951 seconds) Done indexing gene table. Took 52 seconds Done loading transcripts. Took 20 seconds Loaded 2500000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162005 seconds) Done indexing transcript table. Took 35 seconds Loaded 2500000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162113 seconds) Done loading exons. Took 129 seconds Loaded 2600000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162203 seconds) Loaded 2600000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162441 seconds) Loaded 2700000 records from subset 0 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162582 seconds) Done indexing exon table. Took 421 seconds Started 0 processes to run load_gene_models Dropped db.constraint. Done loading constraint info. Took 90 seconds Traceback (most recent call last): File "manage.py", line 80, in manager.run() File "/home/syedhaider/exac/exac_env/local/lib/python2.7/site-packages/flask_script/init.py", line 366, in run raise e TypeError: 'NoneType' object is not iterable Loaded 2700000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162700 seconds) Finished loading subset 0 from ExAC_HC.0.3.final.vep.vcf.gz (2793615 records) Loaded 2800000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162815 seconds) Loaded 2900000 records from subset 2 of 4 from ExAC_HC.0.3.final.vep.vcf.gz (162914 seconds) Finished loading subset 2 from ExAC_HC.0.3.final.vep.vcf.gz (2998287 records)