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korbinian90 / CLEARSWI.jl

improved susceptibility weighted imaging using multi-echo aquisitions
https://korbinian90.github.io/CLEARSWI.jl/dev
MIT License
27 stars 11 forks source link

use clearswi in linux terminal #11

Open jiaen-liu opened 1 year ago

jiaen-liu commented 1 year ago

Is there a package that can run clearswi in the linux terminal? Thanks Jiaen

simon-mri commented 1 year ago

Hi Jiaen,

Yes! Go to https://github.com/korbinian90/CLEARSWI.jl and follow the link "Download standalone executables" to the Linux version... ( https://github.com/korbinian90/CompileMRI.jl/releases/download/v3.6.4/mritools_Linux_3.6.4.tar.gz ).

All the best,

Simon

On Thu, 11 May 2023, 00:05 jiaen-liu, @.***> wrote:

Is there a package that can run clearswi in the linux terminal? Thanks Jiaen

— Reply to this email directly, view it on GitHub https://github.com/korbinian90/CLEARSWI.jl/issues/11, or unsubscribe https://github.com/notifications/unsubscribe-auth/APSK5YM32NHV35IXAP2IUIDXFQGLDANCNFSM6AAAAAAX5JA7GE . You are receiving this because you are subscribed to this thread.Message ID: @.***>

jiaen-liu commented 1 year ago

Oh... I should have noticed it. Thanks!

Jiaen

On Wed, May 10, 2023 at 11:00 PM Simon Daniel Robinson < @.***> wrote:

Hi Jiaen,

Yes! Go to https://github.com/korbinian90/CLEARSWI.jl and follow the link "Download standalone executables" to the Linux version... (

https://github.com/korbinian90/CompileMRI.jl/releases/download/v3.6.4/mritools_Linux_3.6.4.tar.gz ).

All the best,

Simon

On Thu, 11 May 2023, 00:05 jiaen-liu, @.***> wrote:

Is there a package that can run clearswi in the linux terminal? Thanks Jiaen

— Reply to this email directly, view it on GitHub https://github.com/korbinian90/CLEARSWI.jl/issues/11, or unsubscribe < https://github.com/notifications/unsubscribe-auth/APSK5YM32NHV35IXAP2IUIDXFQGLDANCNFSM6AAAAAAX5JA7GE

. You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHub https://github.com/korbinian90/CLEARSWI.jl/issues/11#issuecomment-1543298573, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJ3W3QBCXID7XF657I354KDXFRP6RANCNFSM6AAAAAAX5JA7GE . You are receiving this because you authored the thread.Message ID: @.***>

jiaen-liu commented 1 year ago

Do you know which version is compatible with glibc 2.31 in my ubuntu 20.04 . The most recent version needs glibc 2.34. Thanks!

Jiaen

Hi Jiaen, Yes! Go to https://github.com/korbinian90/CLEARSWI.jl and follow the link "Download standalone executables" to the Linux version... ( https://github.com/korbinian90/CompileMRI.jl/releases/download/v3.6.4/mritools_Linux_3.6.4.tar.gz ). All the best, Simon … On Thu, 11 May 2023, 00:05 jiaen-liu, @.> wrote: Is there a package that can run clearswi in the linux terminal? Thanks Jiaen — Reply to this email directly, view it on GitHub <#11>, or unsubscribe https://github.com/notifications/unsubscribe-auth/APSK5YM32NHV35IXAP2IUIDXFQGLDANCNFSM6AAAAAAX5JA7GE . You are receiving this because you are subscribed to this thread.Message ID: @.>

korbinian90 commented 1 year ago

Hi Jiaen, Thank you for reporting this! Are you calling it via matlab or directly?

For matlab, there is a workaround: https://github.com/korbinian90/ROMEO#issues-when-calling-from-matlab

If the problem occurs for you when calling it directly from the command line, I will try to change the github runner to use ubuntu-20.04 for compilation and trigger a recompilation to create a new binary which hopefully will work.

simon-mri commented 1 year ago

Hi Korbinian,

I have had problems with Ubuntu 22.04 (clear-swi in Julia), which I briefly followed and concluded it lay in some missing Julia libraries which are nothing to do with clear-swi.jl per se. I should have let you know about it. Will have another look and report back.

Cheers,

Simon

On Fri, 23 Jun 2023 at 18:16, Korbinian Eckstein @.***> wrote:

Hi Jiaen, Thank you for reporting this! Are you calling it via matlab or directly?

For matlab, there is a workaround: https://github.com/korbinian90/ROMEO#issues-when-calling-from-matlab

If the problem occurs for you when calling it directly from the command line, I will try to change the github runner to use ubuntu-20.04 for compilation and trigger a recompilation to create a new binary which hopefully will work.

— Reply to this email directly, view it on GitHub https://github.com/korbinian90/CLEARSWI.jl/issues/11#issuecomment-1604506672, or unsubscribe https://github.com/notifications/unsubscribe-auth/APSK5YJYBXZRNDBL22WA2BDXMW6N7ANCNFSM6AAAAAAX5JA7GE . You are receiving this because you commented.Message ID: @.***>

jiaen-liu commented 1 year ago

I called it directly in the linux terminal. I can try recompiling it. Is there a document I can follow? Thanks

On Fri, Jun 23, 2023 at 11:16 AM Korbinian Eckstein < @.***> wrote:

Hi Jiaen, Thank you for reporting this! Are you calling it via matlab or directly?

For matlab, there is a workaround: https://github.com/korbinian90/ROMEO#issues-when-calling-from-matlab

If the problem occurs for you when calling it directly from the command line, I will try to change the github runner to use ubuntu-20.04 for compilation and trigger a recompilation to create a new binary which hopefully will work.

— Reply to this email directly, view it on GitHub https://github.com/korbinian90/CLEARSWI.jl/issues/11#issuecomment-1604506672, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJ3W3QBDYMRHPCRDCNZ3B3TXMW6N7ANCNFSM6AAAAAAX5JA7GE . You are receiving this because you authored the thread.Message ID: @.***>

korbinian90 commented 1 year ago

I recompiled it here for ubuntu-20.04: https://github.com/korbinian90/CompileMRI.jl/releases/tag/v3.6.5

If it still doesn't work, you can try to compile it on your system with this description: https://github.com/korbinian90/CompileMRI.jl

Please report back how it went ;)

Best, Korbinian

jiaen-liu commented 1 year ago

Hi Korbinian

I tested it. It works well. Thanks for the help!

On Mon, Jun 26, 2023 at 8:18 AM Korbinian Eckstein @.***> wrote:

I recompiled it here for ubuntu-20.04: https://github.com/korbinian90/CompileMRI.jl/releases/tag/v3.6.5

If it still doesn't work, you can try to compile it on your system with this description: https://github.com/korbinian90/CompileMRI.jl

Please report back how it went ;)

Best, Korbinian

— Reply to this email directly, view it on GitHub https://github.com/korbinian90/CLEARSWI.jl/issues/11#issuecomment-1607458274, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJ3W3QD43WBFFXLTBJTTPDDXNGD3JANCNFSM6AAAAAAX5JA7GE . You are receiving this because you authored the thread.Message ID: @.***>