Closed tayebehebrahimi64 closed 9 months ago
korbinian90
commented
1 year ago Hi, This seems to be this problem: https://github.com/korbinian90/ROMEO#issues-when-calling-from-matlab Please try if the suggested solution works and report back here ;)
Best, Korbinian
tayebehebrahimi64
commented
1 year ago Thank you for your reply. According to the solution mentioned in the link, I export LD_PRELOAD for mritools_ubuntu_v3.6.6 as well as I did the same for mritools_linux_3.5.5. And then I ran the ROMEO (I mean, according to example_ROMEO_call.m). but I received the following error for mritools_ubuntu_v3.6.6:
ROMEO command: "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/matlab/../bin/romeo" "-p" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/bin/romeo_tmp/Phase.nii" "-o" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/bin/romeo_tmp/Unwrapped.nii" "-B" "-m" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/bin/romeo_tmp/Mag.nii" "-t" "[6.61 12.85 19.09 25.33 31.57]" "-k" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/bin/romeo_tmp/Mask.nii" "--phase-offset-correction" "off" --verbose -q -i /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/matlab/../bin/romeo: /lib64/libc.so.6: version `GLIBC_2.34' not found (required by /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/matlab/../bin/romeo) Error using ROMEO ROMEO unwrapping failed! Check input files for corruption in /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/bin/romeo_tmp
and after a long processing procedur, the following error for mritools_linux_v3.5.5:
main at /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo (unknown line) __libc_start_main at /lib64/libc.so.6 (unknown line) _start at /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo (unknown line) Allocations: 3504926 (Pool: 3503489; Big: 1437); GC: 5 "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo" "-p" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Phase.nii" "-o" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Unwrapped.nii" "-B" "-m" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mag.nii" "-t" "[6.61 12.85 19.09 25.33 31.57]" "-k" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mask.nii" "--phase-offset-correction" "off" --verbose -q -i: Illegal instruction Error using ROMEO ROMEO unwrapping failed! Check input files for corruption in /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp
Could you please do me a favor and help me fix that error?
korbinian90
commented
1 year ago From the last screenshot you sent, it looked like you solved the glibc problem. I'm currently on the road and will read it later in detail, but the message pointed to the input nifti having 5 echoes, but only 3 echo times were specified. Can you try to use -t [1,2,3,4,5] eg. ?
tayebehebrahimi64
commented
1 year ago Hi, I tried t=[1,2,3,4,5] but again the same error:
parameters.TE = [1,2,3,4,5];
[unwrapped, B0] = ROMEO(phase, parameters); ROMEO command: "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo" "-p" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Phase.nii" "-o" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Unwrapped.nii" "-B" "-m" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mag.nii" "-t" "[1 2 3 4 5]" "-k" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mask.nii" "--phase-offset-correction" "off" --verbose -q -i Phase loaded! Mag loaded! Echoes are 1:5 TEs are [1, 2, 3, 4, 5] Trying to read mask from file /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mask.nii individual unwrapping is true perform unwrapping... Invalid instruction at 0x7f20ba875f17: 0xc4, 0xe2, 0xc2, 0xf7, 0xd2, 0x48, 0x85, 0xd2, 0x75, 0xdf, 0x48, 0x89, 0x7c, 0x24, 0x38
signal (4): Illegal instruction in expression starting at none:1 mpfr_const_pi_internal at /N/soft/rhel7/gcc/infrastructure/lib/libmpfr.so (unknown line) . . . .
checked_eval_string at /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo (unknown line) main at /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo (unknown line) __libc_start_main at /lib64/libc.so.6 (unknown line) _start at /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo (unknown line) Allocations: 3497039 (Pool: 3495600; Big: 1439); GC: 5 "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/matlab/../bin/romeo" "-p" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Phase.nii" "-o" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Unwrapped.nii" "-B" "-m" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mag.nii" "-t" "[1 2 3 4 5]" "-k" "/N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp/Mask.nii" "--phase-offset-correction" "off" --verbose -q -i: Illegal instruction Error using ROMEO ROMEO unwrapping failed! Check input files for corruption in /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_Linux_3.5.5/bin/romeo_tmp
It is nice of you if you have any clue to fix this error. Best, Tina
tayebehebrahimi64
commented
1 year ago I tried to run romeo through command line. I could not run it through mritools, so I used romeo_linux_3.4.8 version. for the first time I got results, but I repeated the same procedure for another data, it does not work. I am pasting the error message:
$ romeo -p PHASE_0004.nii -m MAG_0004.nii -k mask_0004.nii -B -t [6.62,12.85,19.09,25.33,31.57] -o /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/romeo_linux_3.2.8/bin/res Invalid instruction at 0x7fe078d75f17: 0xc4, 0xe2, 0xc2, 0xf7, 0xd2, 0x48, 0x85, 0xd2, 0x75, 0xdf, 0x48, 0x89, 0x7c, 0x24, 0x38
signal (4): Illegal instruction in expression starting at none:1 mpfr_const_pi_internal at /N/soft/rhel7/gcc/infrastructure/lib/libmpfr.so (unknown line) mpfr_cache at /N/soft/rhel7/gcc/infrastructure/lib/libmpfr.so (unknown line)
BigFloat at ./irrationals.jl:176 [inlined] BigFloat at ./irrationals.jl:176 [inlined]
setprecision at ./mpfr.jl:952 Type at ./irrationals.jl:68 unknown function (ip: 0x7fe03b08e56f) _jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined] jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429 jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1788 [inlined] do_apply at /buildworker/worker/package_linux64/build/src/builtins.c:713 jl_f__apply_pure at /buildworker/worker/package_linux64/build/src/builtins.c:739 pure_eval_call at ./compiler/abstractinterpretation.jl:1026 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:57 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1900 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1900 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_edge at ./compiler/typeinfer.jl:823 [inlined] abstract_call_method at ./compiler/abstractinterpretation.jl:504 abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:105 abstract_call_known at ./compiler/abstractinterpretation.jl:1342 abstract_call at ./compiler/abstractinterpretation.jl:1397 abstract_call at ./compiler/abstractinterpretation.jl:1382 abstract_eval_statement at ./compiler/abstractinterpretation.jl:1534 typeinf_local at ./compiler/abstractinterpretation.jl:1918 typeinf_nocycle at ./compiler/abstractinterpretation.jl:2014 _typeinf at ./compiler/typeinfer.jl:226 typeinf at ./compiler/typeinfer.jl:209 typeinf_ext at ./compiler/typeinfer.jl:909 typeinf_ext_toplevel at ./compiler/typeinfer.jl:942 typeinf_ext_toplevel at ./compiler/typeinfer.jl:938 jfptr_typeinf_ext_toplevel_9901.clone_1 at /geode2/home/u100/tinabrah/Carbonate/Documents/mritools_linux_3.2.8/lib/julia/sys.so (unknown line) _jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined] jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429 jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1788 [inlined] jl_type_infer at /buildworker/worker/package_linux64/build/src/gf.c:295 jl_generate_fptr at /buildworker/worker/package_linux64/build/src/jitlayers.cpp:338 jl_compile_method_internal at /buildworker/worker/package_linux64/build/src/gf.c:1980 jl_compile_method_internal at /buildworker/worker/package_linux64/build/src/gf.c:2246 [inlined] _jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2239 [inlined] jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429 unwrapping_main at /home/korbi/.julia/dev/RomeoApp/src/caller.jl:137 julia_main at /home/korbi/.julia/dev/RomeoApp/src/RomeoApp.jl:12 jfptr_julia_main_63607.clone_1 at /geode2/home/u100/tinabrah/Carbonate/Documents/mritools_linux_3.2.8/lib/julia/sys.so (unknown line) _jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined] jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429 jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1788 [inlined] do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:126 eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:215 eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:166 [inlined] eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:587 jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:731 jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:885 jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:830 jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:944 jl_eval_string at /buildworker/worker/package_linux64/build/src/jlapi.c:115 checked_eval_string at romeo (unknown line) main at romeo (unknown line) __libc_start_main at /lib64/libc.so.6 (unknown line) _start at romeo (unknown line) Allocations: 2691021 (Pool: 2689906; Big: 1115); GC: 3 Illegal instruction (core dumped)
sorry for this long message. I am confused about this error. Could you please help me to fix it? Thank you
korbinian90
commented
1 year ago Hi, I'm sorry that it is so troublesome for you to run ROMEO!
I have two ideas what might fail here: 1) library mismatch again, the MRI tools package should ship with it's on dependencies and use them. When used from the command line this should use the correct dependencies, so I'm not sure why it would fail here. You could try the newest version in the command line. Another solution would be to use it via Options 2, 3 or 4 (https://github.com/korbinian90/ROMEO#get-romeo). 2) Datatype, it says something about Big float, however I never explicitly used big float, but ROMEO adapts to the Datatype of the nifti. Maybe something goes wrong there. Can you try to save the nifti again in single datatype (also called float32). Alternatively, you could send me the data (email k.eckstein@uq.edu.au). Then I would try to debug it.
Since one dataset worked, the library problem shouldn't be the issue here. So I'm more leaning towards a nifti datatype that ROMEO struggles with.
Best Korbinian
korbinian90
commented
9 months ago probably related #17
Hi, I am trying to run romeo for phase unwrapping via Matlab. I downloaded mritools V3.6.6. But when I run example_ROMEO_call.m file according my data, it gives an error:
Error using ROMEO ROMEO unwrapping failed! Check input files for corruption in /N/project/dMRI1/CARE_CSI/ANALYSIS/QSM/temp/Tina/mritools_ubuntu/bin/romeo_tmp.
Could you please help me to fix it.
Thank you.