Cannot install - Githubissues

kordastilab / ImmunoCluster

MIT License

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Cannot install #8

Open david-priest opened 1 year ago

david-priest commented 1 year ago

Here's the error I get when I try to install.

`Warning messages: 1: package ‘MatrixGenerics’ was built under R version 4.3.1 2: package ‘IRanges’ was built under R version 4.3.1 Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ‘Rphenograph’ Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘immunoCluster’

removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/immunoCluster’ Warning message: In i.p(...) : installation of package ‘/var/folders/jb/bxpyjb813ml4j4shlzdh4grc0000gq/T//RtmpbldIsJ/file4b477c001042/immunoCluster_0.1.0.tar.gz’ had non-zero exit status`

JamesOpz commented 1 year ago

Hi purisuto,

I've gone through a fresh install process with R 4.3.1. This error occurs because you have to now install Rphenograph manually beforehand from: https://github.com/JinmiaoChenLab/Rphenograph using the following code:

devtools::install_github("JinmiaoChenLab/Rphenograph")

Then proceed with the standard install command:

devtools::install_github("kordastilab/ImmunoCluster")

Let me know if this solves the issue!