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kordk / torch-ecpg

(GPU accelerated) eCpG mapper
BSD 3-Clause "New" or "Revised" License
2 stars 0 forks source link

Problem with installation #39

Closed Tn5871 closed 1 month ago

Tn5871 commented 5 months ago

Hi, when I try to install the package using the "pip install git+https://github.com/kordk/torch-ecpg.git" command, I get the following error:

Collecting git+https://github.com/kordk/torch-ecpg.git Cloning https://github.com/kordk/torch-ecpg.git to /tmp/pip-req-build-gpalenfs Running command git clone -q https://github.com/kordk/torch-ecpg.git /tmp/pip-req-build-gpalenfs ERROR: Command errored out with exit status 1: command: /home/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-gpalenfs/setup.py'"'"'; file='"'"'/tmp/pip-req-build-gpalenfs/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-szamn4f2 cwd: /tmp/pip-req-build-gpalenfs/ Complete output (7 lines): Traceback (most recent call last): File "", line 1, in File "/tmp/pip-req-build-gpalenfs/setup.py", line 15, in requirements = [line.removesuffix('\n') for line in file.readlines()] File "/tmp/pip-req-build-gpalenfs/setup.py", line 15, in requirements = [line.removesuffix('\n') for line in file.readlines()] AttributeError: 'str' object has no attribute 'removesuffix'

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

kordk commented 5 months ago

What version of Python are you using?

liamgd commented 5 months ago

The string removesuffix method was added in PEP 616 as a part of Python 3.9. The program was built on Python 3.10 and is likely compatible with 3.11 and 3.12. Upgrade to one of these versions and try to reinstall the package. I hope this helps.