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kosta777 / parallel-genomeseq

Parallelization of popular genome sequencing algorithms
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OpenMP for fine-grain parallelization #13

Open spaceben opened 4 years ago

spaceben commented 4 years ago

@hanyao8 Would you like to start setting up OpenMP?

OpenMP would attach here and parallelize this for loop: https://github.com/kosta777/parallel-genomeseq/blob/685ecb5b8fe8c53312d1e7d53634d0dd112023e6/src/aligner/similaritymatrix.cpp#L42

hanyao8 commented 4 years ago

Sure, I'm on it