(check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)
A simple command line interface would be really really helpful. A mandatory GUI is a significant hindrance when dealing with remote compute machines, which often do not have X11 etc installed.
Satisfying the large dependency tree is hard to justify to an HPC admin, when the program could run quite easily without one.
meiers
commented
9 years ago
A simple command line interface would be really really helpful. A mandatory GUI is a significant hindrance when dealing with remote compute machines, which often do not have X11 etc installed.
Satisfying the large dependency tree is hard to justify to an HPC admin, when the program could run quite easily without one.