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kotori-y / mpek

MPEK is a universal tool for predicting enzyme turnover number (kcat) and Michaelis-Menten constant (Km) for all types of enzymes. BTW, an online prediction server is also provided.
http://mathtc.nscc-tj.cn/mpek
MIT License
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Missing "Mole_BERT" module #4

Open orli91 opened 1 month ago

orli91 commented 1 month ago

Dear authors, I am trying to use your model but it appears it does not find the Mole_BERT module before reading any input. In datasetes/init.py fails to import the "Mole_BERT.loader", which is apparently missing from pre-requisite packages or data folder structure. How can this be installed properly? Marco

Traceback (most recent call last): File "evaluate.py", line 21, in from MTLKcatKM.datasets import MTLKDataset File "/home/marco/Scrivania/mpek/MTLKcatKM/../MTLKcatKM/datasets/init.py", line 19, in from Mole_BERT.loader import mol_to_graph_data_obj_simple ModuleNotFoundError: No module named 'Mole_BERT'

Decemberus commented 1 day ago

Dear authors, I am trying to use your model but it appears it does not find the Mole_BERT module before reading any input. In datasetes/init.py fails to import the "Mole_BERT.loader", which is apparently missing from pre-requisite packages or data folder structure. How can this be installed properly? Marco

Traceback (most recent call last): File "evaluate.py", line 21, in from MTLKcatKM.datasets import MTLKDataset File "/home/marco/Scrivania/mpek/MTLKcatKM/../MTLKcatKM/datasets/init.py", line 19, in from Mole_BERT.loader import mol_to_graph_data_obj_simple ModuleNotFoundError: No module named 'Mole_BERT'

Hello! I have encountered the same problem. I would like to ask if you have any ideas to solve this problem now?