koustav-pal HiCBricks issues

koustav-pal / HiCBricks

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

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Invert coordinates to plot lower triangle from upper triangle bricks

#26 Kelly-ST-HRI opened 1 year ago
1
Correct y_coords to define axes limits from the correct chromosomes

#25 Kelly-ST-HRI opened 1 year ago
0
Is "chrs" removed from Create_many_Bricks_from_mcool or Brick_load_data_from_mcool?

#24 xl5525 opened 1 year ago
0
error: invalid 'times' argument

#23 MichelMoser opened 2 years ago
0
Plotting more than one chromosome at once

#22 OliverPStuart opened 2 years ago
2
Error running Create_many_Bricks with H5

#21 TomKellyGenetics closed 2 years ago
1
Package failing on Bioconductor

#20 Kayla-Morrell closed 1 year ago
3
Pearson correlation matrix

#19 porpheria opened 4 years ago
0
y-axis coordinates and x-axis coordinates are the same

#18 koustav-pal opened 4 years ago
3
If x_axis is false Brick_vizart_plot_heatmap does not plot y_axis

#17 koustav-pal opened 4 years ago
0
any suggestion on how to generate aggregate submatrix plot

#16 yxian9 closed 4 years ago
2
Is it possible to separate Hi-C signal into weights and observed contacts

#15 koustav-pal opened 4 years ago
0
Add support for HiCExplorer files

#14 koustav-pal opened 4 years ago
0
Vignette examples cannot be followed

#13 mdozmorov closed 4 years ago
2
Need help to read in the mcool file converted by hicexplorer

#12 zhjilin opened 5 years ago
1
Merge pull request #10 from koustav-pal/master

#11 koustav-pal closed 5 years ago
0
Making development up to date with master

#10 koustav-pal closed 5 years ago
0
Moving away from a multiple matrices in one hdf approach towards a single matrix in one hdf approach

#9 koustav-pal closed 5 years ago
0
Implement Brick container for parallelization

#8 koustav-pal closed 4 years ago
1
Norm.factor not found

#7 cmdoret closed 5 years ago
3
Integrate direct access to .hic files

#6 koustav-pal opened 5 years ago
1
problem loading mcool file

#5 imerelli closed 5 years ago
10
Show me a Heatmap

#4 koustav-pal closed 5 years ago
1
Removed BiocFileCache dependency and introduced the explicit file path

#3 koustav-pal closed 5 years ago
0
Patch 1

#2 fferrari closed 5 years ago
0
Bug when creating a new brick with the same path/name of a previous brick

#1 koustav-pal closed 5 years ago
1