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kr-colab / ReLERNN

Recombination Landscape Estimation using Recurrent Neural Networks
MIT License
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Using --mask option does not change the output #52

Open irarun opened 2 months ago

irarun commented 2 months ago

Hello,

I've run ReLERNN both with and without the --mask option, yet I've obtained identical results (same window size and the resulting table with nSites). For --mask option I provide a .bed file containing masked transposable elements obtained from EDTA. In the log file, I notice the following message:

'Accessibility mask found: calculating the proportion of the genome that is masked... 44.0% of the genome inaccessible'

Despite this, there is no impact on the output. Could you shed some light on why this might be the case?

andrewkern commented 1 month ago

what do you mean that there is no impact on output?