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kr-colab / diploSHIC

feature-based deep learning for the identification of selective sweeps
MIT License
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ValueError cannot reshape array of size 150000 into shape (1000,13,11) #49

Closed vkhanna7 closed 2 months ago

vkhanna7 commented 1 year ago

for f in dip_data/.out; do python3 ./packages/bin/diploSHIC fvecSim haploid $f $f.haploid.fvec --totalPhysLen 1000000 --numSubWins 10; done mkdir sim3_rawFVFiles && mv dip_data/.fvec sim3_rawFVFiles/ mkdir sim3_trainingSets python3 ./packages/bin/diploSHIC makeTrainingSets sim3_rawFVFiles/neutral.out.haploid.fvec sim3_rawFVFiles/soft \ sim3_rawFVFiles/hard 5 0,1,2,3,4,6,7,8,9,10 sim3_trainingSets/

python3 ./packages/bin/diploSHIC train sim3_trainingSets/ sim3_trainingSets/ bfsModel

The last step gives ValueError. Any suggestions or recommendations?

andrewkern commented 1 year ago

you have a mismatch between the number of subwindows you calculated stats on and the number of subwindows you are telling makeTrainingSets to use, it looks like.