discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
floating point precision truncation was leading to collisions between mutation sites. This led to rare cases where a mutation was effectively "missed" and only visible because a no recombination simulation violated the four gamete test.
floating point precision truncation was leading to collisions between mutation sites. This led to rare cases where a mutation was effectively "missed" and only visible because a no recombination simulation violated the four gamete test.