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kr-colab / im_clam

package for exact calculation of the joint site frequency spectrum under Isolation with Migration models as described in Kern and Hey (2017) http://www.genetics.org/content/207/1/241
MIT License
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wget slepc #4

Open REDitter opened 4 years ago

REDitter commented 4 years ago

When I enter:

wget http://slepc.upv.es/download/download.php?filename=slepc-3.5.4.tar.gz -O slepc-3.5.4.tar.gz

it returns:

Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/dirtbag/.wget-hsts'. HSTS will be disabled. --2020-08-28 10:23:30-- http://slepc.upv.es/download/download.php?filename=slepc-3.5.4.tar.gz Resolving slepc.upv.es (slepc.upv.es)... 158.42.185.71 Connecting to slepc.upv.es (slepc.upv.es)|158.42.185.71|:80... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: https://slepc.upv.es/download/download.php?filename=slepc-3.5.4.tar.gz [following] --2020-08-28 10:23:30-- https://slepc.upv.es/download/download.php?filename=slepc-3.5.4.tar.gz Connecting to slepc.upv.es (slepc.upv.es)|158.42.185.71|:443... connected. HTTP request sent, awaiting response... 404 Not Found 2020-08-28 10:23:31 ERROR 404: Not Found.

When I download slepc-3.5.4.tar.gz from the website or git clone it and try to: ./configure

it returns: Checking LAPACK library... ERROR: cannot generate Fortran stubs; try configuring PETSc with --download-sowing or use a mercurial version of PETSc

(I followed the instructions for getting PETSC)

andrewkern commented 4 years ago

huh that link must be dead now. i haven't been actively developing this software, but would accept PRs if you can find where they have moved the slepc libraries.

thanks

REDitter commented 4 years ago

I found it at Also I got the two to work after starting over and re-configuring PETSC by adding "--download-sowing"

I guess I will give up, because when I tried to "make all" im_clam I got a fatal error.

That is unfortunate, I was looking for to trying im_clam. Is there an alternative software you would recommend?

andrewkern commented 4 years ago

what error did you get? it should compile if you were able to download slepc