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kr-colab / locator

deep learning prediction of geographic location from individual genome sequences
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Verbose argument #14

Closed alexpiper closed 4 years ago

alexpiper commented 4 years ago

Would it be possible to add a --verbose argument to locator that is passed on to keras model.fit verbose option? The model fitting progress bar doesn't seem to play nicely with SLURM job scripts and is printing over 200k lines into the stdout file. Obviously not an urgent issue, just a slight annoyance.

Cheers, Alex

cjbattey commented 4 years ago

good idea -- the current setting is a mess for logging. This PR added a new argument to pass the keras verbose setting: https://github.com/kr-colab/locator/pull/15. 0 is silent, 1 is the current setting, 2 just prints the epochs without the progress bars. You should be able to install the new version by following the github install instructions in the readme.

alexpiper commented 4 years ago

Perfect, thanks CJ!