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kr-colab / locator

deep learning prediction of geographic location from individual genome sequences
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matrix input and plotting default changes #6

Closed cjbattey closed 4 years ago

cjbattey commented 4 years ago

Merging changes from my local repo. Important stuff is:

  1. added a matrix input option (ie a tab-delimited matrix of minor allele counts)
  2. switched defaults to geographic centroid vs kernal density peak in plot_locator.R
  3. added K.clear_session() to the bootstrap block to avoid memory issues (unclear if this is an issue on all systems)