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kr-colab / popvae

genotype dimensionality reduction with a VAE
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astor/code_gen.py #10

Closed gaushi closed 3 years ago

gaushi commented 3 years ago

Hi @cjbattey FYI, When I first installed I had issues with astor/code_gen.py with async being keyword in Python 3.7 I tried to fix it by changing async to is_async in code_gen.py Popvae seems to work now (with example dataset in the repo).

Can you take a look and confirm what I noticed, or was I using wrong version of astor (I did everything according to instructions)?

Thanks, Best regards,

cjbattey commented 3 years ago

Hi @gaushi! I've never run in to this issue myself. Actually I don't even know which dependency is importing the astor package (since it isn't directly imported by popvae), but this sounds like a possible issue with astor versioning in one of their setup scripts. Do you have a log of the original issue so I can try and find where the issue is?

gaushi commented 3 years ago

Hi @cjbattey I didn't keep the log of the original issue (my bad). After that fix I made, popvae seems to work fine (with example dataset and also with the test run that I had with my dataset). Sorry I could be of no further help in pointing out exact issue.