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krassowski
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easy-entrez
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
https://easy-entrez.readthedocs.io/en/latest/
GNU Lesser General Public License v3.0
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Request: `async` support
#36
jamesbraza
opened
11 months ago
0
Documenting how to build docs
#35
jamesbraza
closed
1 year ago
0
Suggestion: `pytest-vcr` for reliable testing
#34
jamesbraza
opened
1 year ago
2
How to (1) search by title and (2) download abstract from matching paper
#33
jamesbraza
closed
1 year ago
1
Adding `requirements.docs.txt`
#32
jamesbraza
closed
1 year ago
2
Bigger `EntrezAPI` docstring and `__init__` type hints
#31
jamesbraza
closed
1 year ago
0
Request: `StrEnum` for all filters
#30
jamesbraza
opened
1 year ago
0
Better DOI term snippet, 3.7+ testing docs
#29
jamesbraza
closed
1 year ago
1
Docs request: significance of `email`
#28
jamesbraza
closed
1 year ago
2
Docs request: possible tool names
#27
jamesbraza
closed
1 year ago
0
Officially supporting Python 3.12
#26
jamesbraza
closed
1 year ago
0
Request: officially supporting Python 3.12
#25
jamesbraza
closed
1 year ago
1
`pip install` to `README`
#24
jamesbraza
closed
1 year ago
2
Bump version to 0.3.7
#23
krassowski
closed
1 year ago
0
Silence pytest warnings
#22
jonasfreimuth
closed
1 year ago
0
Support pagination of search results
#21
krassowski
opened
1 year ago
0
Add new format RDT config
#20
krassowski
closed
1 year ago
0
Running pytest sometimes fails
#19
jonasfreimuth
opened
1 year ago
1
Allow to disable Entrez search result limit
#18
jonasfreimuth
closed
1 year ago
6
`fetch` method with JSON response raises exception
#17
GrazingScientist
closed
1 year ago
1
Entrez search result limit
#16
noamiz5060
closed
1 year ago
20
Document batching in README, parse snp batch results
#15
krassowski
closed
1 year ago
0
Get coding consequence, add range example
#14
krassowski
closed
1 year ago
0
Fix misalignment in signatures for methods with `@support_batches`
#13
krassowski
opened
1 year ago
0
Add DOI badge to README
#12
krassowski
closed
1 year ago
0
Document `parse_dbsnp_variants`, add py3.11
#11
krassowski
closed
1 year ago
0
Add example for converting DOI to PMID
#10
krassowski
closed
1 year ago
0
Improve handling of edge cases for `parse_dbsnp_variants`
#9
krassowski
closed
1 year ago
0
Fix `is_response_for`
#8
krassowski
closed
1 year ago
0
Add parsing utilities
#7
krassowski
closed
1 year ago
0
How can I obrain the SNP rs ids using CHR:POS_A1_A2 format for > 3K SNPs?
#6
Mahantesh-Biradar
closed
1 year ago
1
Batch querying
#5
Fnyasimi
closed
2 years ago
2
Add SNP position example
#4
krassowski
closed
2 years ago
0
Update CI versions matrix (-3.6, +3.10)
#3
krassowski
closed
2 years ago
0
Examples fail to run
#2
jimrybarski
opened
3 years ago
2
problem of (ReadTimeout ) API time out with easy_entrez
#1
ahmedibatta
closed
3 years ago
2