Creating the systematic flow diagram for the Omics.ipynb for MS mutiple panel figure

krassowski / multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

https://doi.org/10.3389/fgene.2020.610798

MIT License

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Creating the systematic flow diagram for the Omics.ipynb for MS mutiple panel figure #15

Closed vd4mmind closed 4 years ago

vd4mmind commented 4 years ago

Hi @krassowski ,

Creating the issue here so that we can track it. Let me know how you would like my help in creating the flow diagram/chart for the systematic meta-analysis of omics/ome, etc terms that build up the various plots (multi-panel) that will feed into the figure of the MS. Also try to create the UpSet/Shankey versions of the plots as well apart from the multiple barplots that you will create, apart from the one that you showed today.

Let me know, what help is needed from my end.

vd4mmind commented 4 years ago

@krassowski this is the one we should be more aiming for the current MS. For the multi-omic one let's wait till reviewer comments.

vd4mmind commented 4 years ago

@krassowski any updates on the flow diagram? I think the rest all looks good for us to send to Biswa. We are just left with the flow diagram. Even the method section to an extent addresses what we did and why this was done. The flow can help with providing a visual context for inclusion/exclusion criteria of the number of journals we started with and that we ended with allowing us to make all the various predictions in the multi-panel figure.

krassowski commented 4 years ago

Sorry, I missed your comment earlier - was too engaged fighting with the layout. I have not included journal numbers... Please do let me know what you think on the PR.

vd4mmind commented 4 years ago

Replied in the PR channel @krassowski