kreft / iDynoMiCS

Individual-based Dynamics of Microbial Communities Simulator
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number of iterations #75

Closed nadaa closed 7 years ago

nadaa commented 8 years ago

Hi, Why I got these selected iterations , isn't should be ordered as 0,1,2,3,.....etc, I used multi_species_multi_substrate_nitrification_EPS_2D protocol .

2015-12-01 23_15_05-agent_state

Thanks & regards, Nada

roughhawkbit commented 8 years ago

Response from Jan Kreft:

Dear Nada,

Output is saved every 20 iterations because of the settings in the protocol file, where outputPeriod is 2 hours and the timeStep is 0.1 hours:

<simulator>
    <param name="restartPreviousRun">false</param>
    <param name="randomSeed">42</param>
     <param name="outputPeriod" unit="hour">2</param>
     <timeStep>
           <param name="adaptive">true</param>
           <param name="timeStepIni" unit="hour">0.1</param>
           <param name="timeStepMin" unit="hour">0.025</param>
           <param name="timeStepMax" unit="hour">1</param>
           <param name="endOfSimulation" unit="day">3</param>
     </timeStep>
     <param name="agentTimeStep" unit="hour">0.05</param>
</simulator>

Hope that helps,

Jan

kreft commented 7 years ago

Wasn't an issue, results are as expected given protocol settings.