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kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
97 stars 31 forks source link

export of models in BioImage Model Zoo format #156

Open k-dominik opened 1 year ago

k-dominik commented 1 year ago

Since plant-seg allows users to train models, it would be nice to write them out in BioImage Model Zoo format, or is this already possible?

wolny commented 11 months ago

When I finish the training functionality in PlantSeg (see: https://github.com/hci-unihd/plant-seg/pull/159), I'll make sure that the models are saved in the bioimage.io format and ready to upload to zenodo.

We also discussed with @lorenzocerrone that bioimage.io models with torchscript weights should also be supported in plantseg.