Error on the GASP segmentation using GUI: Need more labels than can be represented in the destination type

kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images

https://kreshuklab.github.io/plant-seg/

MIT License

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Error on the GASP segmentation using GUI: Need more labels than can be represented in the destination type #166

Open athulrv opened 11 months ago

athulrv commented 11 months ago

Need more labels error

qin-yu commented 11 months ago

Nice that you found this, but the GUI would work for our model after fixing this because we have 2-channel output. The current implementation hardcoded the software to use the 0th channel, so for us the GASP runs on a wrong channel. I add changes to make dataset and channel selection user friendly in #165, and hopefully we can have it ready soon.

athulrv commented 11 months ago

@qin-yu this error was when i tried to segment cell wall, not nuclei with two channels.