Move plantseg to conda-forge

[wolny]

Here's the conda-forge PR: https://github.com/conda-forge/staged-recipes/pull/24713 @lorenzocerrone @qin-yu could you write in the comments of this PR that you agree to be a maintainer?

[wolny]

for some reason the tests fail for linux build:

  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/colormaps/__init__.py", line 2, in <module>
    from napari.utils.colormaps.colormap import Colormap
  File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/_pytest/assertion/rewrite.py", line 186, in exec_module
    exec(co, module.__dict__)
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/colormaps/colormap.py", line 7, in <module>
    from napari.utils.color import ColorArray
  File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/_pytest/assertion/rewrite.py", line 186, in exec_module
    exec(co, module.__dict__)
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/color.py", line 7, in <module>
    from napari.utils.colormaps.standardize_color import transform_color
  File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/_pytest/assertion/rewrite.py", line 186, in exec_module
    exec(co, module.__dict__)
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/napari/utils/colormaps/standardize_color.py", line 27, in <module>
    from vispy.color import ColorArray, get_color_dict, get_color_names
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/color/__init__.py", line 12, in <module>
    from .colormap import (Colormap, BaseColormap,  # noqa
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/color/colormap.py", line 14, in <module>
    import vispy.gloo
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/gloo/__init__.py", line 47, in <module>
    from . import gl  # noqa
    ^^^^^^^^^^^^^^^^
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/gloo/gl/__init__.py", line 230, in <module>
    from . import es2 as default_backend  # noqa
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/conda/staged-recipes/build_artifacts/plant-seg_1701963102630/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/vispy/gloo/gl/es2.py", line 48, in <module>
    raise OSError('GL ES 2.0 library not found')

see: https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=838731&view=logs&j=6f142865-96c3-535c-b7ea-873d86b887bd&t=22b0682d-ab9e-55d7-9c79-49f3c3ba4823

I'll add pyqt explicitly to meta.yaml and see if it works

[wolny]

@constantinpape also run into this issue, when trying to release micro-sam (https://github.com/conda-forge/staged-recipes/pull/23374). Looks like the workaround is to remove napari from the dependencies for now...

[lorenzocerrone]

Hey Man, thanks for the PR. Have you tried to use this fix in the first comment? https://github.com/conda-forge/staged-recipes/pull/23374#issuecomment-1649675734

PS: in the PR, should I just write that I will be a maintainer? or is there a specific command?

[qin-yu]

I agree to be a maintainer.

[wolny]

@lorenzocerrone I've added yum_requirements.txt for opengl, let's see if it works

@lorenzocerrone @qin-yu it's enough to say 'I agree to be maintainer/co-maintainer of this package' in the comment of the conda-forge PR https://github.com/conda-forge/staged-recipes/pull/24713

[wolny]

@lorenzocerrone jtlyk, adding yum_requirements solved the issue with opengl. There is a problem with windows build Unsatisfiable dependencies for platform win-64: "pytorch". I'll try to add pytorch as optional dependency, since anyway it has to be installed separately with pytorch and nvidia channels.

[wolny]

kk, all checks have passed, so it's good to go. I've pinged the reviewers.

[wolny]

plant-seg is on conda-forge now! Here's the feedstock repo: https://github.com/conda-forge/plant-seg-feedstock we need to keep up to date with future releases. We should update the installation instructions to use the conda-forge channel now.