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kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
90 stars 31 forks source link

Update mamba install #180

Closed jackyko1991 closed 8 months ago

jackyko1991 commented 8 months ago

update package path to match conda-forge: https://anaconda.org/lcerrone/plantseg

lorenzocerrone commented 8 months ago

Hi @jackyko1991,

Indeed the installation instructions are broken in the current main, thanks for spotting it and for your pull request!!

Recently we moved plantseg deployement from my channel lcerrone to conda-forge. But in doing so we also changed the pachage name from plantseg to plant-seg.

So, the correct installation command from now on should be:

mamba create -n plant-seg -c pytorch -c nvidia -c conda-forge pytorch pytorch-cuda=12.1 pyqt plant-seg

Could you please update your pull request before I merge it.

jackyko1991 commented 8 months ago

@lorenzocerrone readme updated with new package name

lorenzocerrone commented 8 months ago

Thanks a lot!