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kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
97 stars 31 forks source link

Add the correct prediction channels in napari interface #183

Closed Buglakova closed 9 months ago

Buglakova commented 9 months ago

Hello,

When I use UNet prediction in Napari, the layers that are added are not consistent with the choices. For example, I know that generic_plant_nuclei_3D has both boundary and nuclei channels but if I choose "All" in the menu, it only adds the nuclei channel. As a result, I can't run the postprocessing step. I tried a few models and for all of them only one channel was added.

qin-yu commented 9 months ago

@Buglakova I'm fixing it in #173