search

kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
88 stars 31 forks source link

No channel selection in "Open File" widget #204

Closed qin-yu closed 5 months ago

qin-yu commented 6 months ago

As discussed in #173, the fix for multi-channel network in Napari GUI is to show both channels from the output. But there is no function for loading such output saved in HDF5. Now the Napari GUI doesn't have an automatic save (into a single HDF5), and I believe it's better to save the network output channels in separate files in the other two networks. So, I propose that two changes could be made:

  1. Add a channel selection for HDF5 in "Open File" widget
  2. Give options for the saving of multi-channel data in CLI and Legacy GUI. This has very low priority if 1 is fixed
qin-yu commented 6 months ago

Need to refactor this widget.

qin-yu commented 5 months ago

Fixed by #212