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kreshuklab
/
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
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Add validation, adaptation and halo to prediction widgets
#211
Closed
qin-yu
closed
5 months ago
qin-yu
commented
6 months ago
Fix #205
Fix raw2seg CLI ignoring halo in user config
Add halo option to both Legacy and Napari GUIs
Start looking into #209
Add widget input checking mechanism for all prediction widgets in Napari GUI
Add adaptation in response to user input halo
Checklist
[x] CLI: CNN Prediction
[x] GUI: CNN Prediction
[x] Napari: "UNet + Segmentation" & "Extra-Pred" tabs
3D Example
2D Example
qin-yu
commented
5 months ago
3D
2D
Checklist
3D Example
2D Example