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kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
88 stars 31 forks source link

Dev Env: Add BioImage.IO Core dependency and fix CUDA installation #229

Closed qin-yu closed 4 months ago

qin-yu commented 4 months ago
  1. Use cuda-version=12.3 to avoid mamba adding cudatoolkit (11.1) into the environment, fix #228
  2. Add bioimageio.core to dev environment to allow alternative inference engine. PlantSeg inference and bioimageio.core inference are separately and successfully tested.