$ pytest
============================= test session starts ==============================
platform linux -- Python 3.11.9, pytest-8.2.1, pluggy-1.5.0
PyQt5 5.15.9 -- Qt runtime 5.15.8 -- Qt compiled 5.15.8
rootdir: /g/kreshuk/yu/repositories/plant-seg-doc
plugins: napari-plugin-engine-0.2.0, npe2-0.7.5, napari-0.4.19.post1, anyio-4.2.0, qt-4.4.0, xdist-3.5.0
collected 32 items
tests/test_bioimageio.py ... [ 9%]
tests/test_data_processing.py ........ [ 34%]
tests/test_io_zarr.py ..... [ 50%]
tests/test_model.py ... [ 59%]
tests/test_model_zoo.py . [ 62%]
tests/test_network_predictions.py .. [ 68%]
tests/test_pipeline_executor.py ... [ 78%]
tests/test_widget_preprocessing.py ....... [100%]
=============================== warnings summary ===============================
../../miniconda3/envs/plant-seg-bioimage-io/lib/python3.11/site-packages/jupyter_client/connect.py:22
/g/kreshuk/yu/miniconda3/envs/plant-seg-bioimage-io/lib/python3.11/site-packages/jupyter_client/connect.py:22: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
given by the platformdirs library. To remove this warning and
see the appropriate new directories, set the environment variable
`JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
The use of platformdirs will be the default in `jupyter_core` v6
from jupyter_core.paths import jupyter_data_dir, jupyter_runtime_dir, secure_write
tests/test_data_processing.py::TestDataProcessing::test_preprocessing_default_voxel_size
/g/kreshuk/yu/repositories/plant-seg-doc/plantseg/io/h5.py:22: RuntimeWarning: Voxel size not found, returning default [1.0, 1.0. 1.0]
warnings.warn('Voxel size not found, returning default [1.0, 1.0. 1.0]', RuntimeWarning)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================== 32 passed, 2 warnings in 81.70s (0:01:21) ===================
qin-yu
commented
1 month ago