`Need more labels` error from `vigra` during watershed in classic GUI

kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images

https://kreshuklab.github.io/plant-seg/

MIT License

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`Need more labels` error from `vigra` during watershed in classic GUI #281

Open athulrv opened 5 months ago

athulrv commented 5 months ago

We cant afford to downsample the image or crop further the image. Would be great if there are other ways to fix this issue.

plantseg- need more labels error

lorenzocerrone commented 5 months ago

Hi Athul, have you tried to set the "Run Watershed in 2D" to True? Also could you share with me the problematic sample? I have never had a similar issue

qin-yu commented 2 days ago

Hey @athulrv could you send me the volume for debugging?

qin-yu commented 2 days ago

Related to #166 and #342