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kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
90 stars 31 forks source link

PlantSeg.Core: `ModelZoo`, `PlantSegImage`, and `VoxelSize` #298

Closed qin-yu closed 2 weeks ago

qin-yu commented 2 weeks ago
  1. Refactored plantseg.io.utils, plantseg.models.zoo, and plantseg.plantseg_image into:
    1. plantseg.core.voxelsize
    2. plantseg.core.zoo
    3. plantseg.core.image
  2. Tests done and pass:
    1. plantseg.core.zoo
  3. Fixed halo in prediction (need to do automatic halo based on image size)
  4. Fixed files with mixed Optional and |, prefer |
  5. Fixed deprecated Tuple and List
  6. Improved key functions