Required package on Lifted Multicut

kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images

https://kreshuklab.github.io/plant-seg/

MIT License

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Required package on Lifted Multicut #96

Closed Pablo1990 closed 3 years ago

Pablo1990 commented 3 years ago

I tried to use the Nuclei and Lifted Multicut approach and I got an error to 'cannot import name 'lifted_problem_from_probabilities' from 'elf.segmentation.features''

So, the solution is basically to install: https://github.com/constantinpape/elf via

conda install -c conda-forge -c cpape elf

It would be nice to incorporate this information somewhere.

Thanks for this great project!! Pablo

lorenzocerrone commented 3 years ago

Hi @Pablo1990,

Thanks a lot for spotting it!! I will put in the troubleshooting guide.

Best, Lorenzo