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krischer / mtspec

Python library for multitaper spectral estimations
http://krischer.github.io/mtspec/
GNU General Public License v3.0
69 stars 44 forks source link

Error running test and examples #12

Closed echavess closed 8 years ago

echavess commented 8 years ago

Hi @krischer and @ThomasLecocq I am interested in this code for EGF deconvolutions / spectral ratios, although I am having issues trying out the examples; any idea what could be happening? Thanks!

[645] ♫♫ python -m mtspec.tests Traceback (most recent call last): File "/Users/ech/anaconda/lib/python2.7/runpy.py", line 151, in _run_module_as_main mod_name, loader, code, fname = _get_module_details(mod_name) File "/Users/ech/anaconda/lib/python2.7/runpy.py", line 101, in _get_module_details loader = get_loader(mod_name) File "/Users/ech/anaconda/lib/python2.7/pkgutil.py", line 464, in get_loader return find_loader(fullname) File "/Users/ech/anaconda/lib/python2.7/pkgutil.py", line 474, in find_loader for importer in iter_importers(fullname): File "/Users/ech/anaconda/lib/python2.7/pkgutil.py", line 430, in iter_importers import(pkg) File "/Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg/mtspec/init.py", line 15, in from .multitaper import mtspec, sine_psd, dpss # NOQA File "/Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg/mtspec/multitaper.py", line 19, in mtspeclib = _load_lib() File "/Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg/mtspec/util.py", line 38, in _load_lib lib = C.CDLL(filename) File "/Users/ech/anaconda/lib/python2.7/ctypes/init.py", line 365, in init self._handle = _dlopen(self._name, mode) OSError: dlopen(/Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg/mtspec/lib/mtspec.py, 6): no suitable image found. Did find: /Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg/mtspec/lib/mtspec.py: file too short

krischer commented 8 years ago

Heyhey,

did you install the latest version from github and can you post your full installation log?

Cheers!

Lion

echavess commented 8 years ago

Yes I did install the last version. I downloaded the master brach from github.

echavess commented 8 years ago

INSTALLATION LOG:

[221] ♫♫ sudo python setup.py install Password: /Users/ech/anaconda/lib/python2.7/site-packages/setuptools-20.3-py2.7.egg/setuptools/dist.py:294: UserWarning: The version specified ('0.3.x') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. running install running bdist_egg running egg_info writing requirements to mtspec.egg-info/requires.txt writing mtspec.egg-info/PKG-INFO writing top-level names to mtspec.egg-info/top_level.txt writing dependency_links to mtspec.egg-info/dependencylinks.txt reading manifest file 'mtspec.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'mtspec/src/data/' no previously-included directories found matching 'mtspec/src/developing/' no previously-included directories found matching 'mtspec/src/doc/' no previously-included directories found matching 'mtspec/src/examples/' no previously-included directories found matching 'mtspec/src/license/' no previously-included directories found matching 'mtspec/src/Makefile' no previously-included directories found matching 'mtspec/src/makefiles/' no previously-included directories found matching 'mtspec/src/Makefile.win' no previously-included directories found matching 'mtspec/src/matlab/' no previously-included directories found matching 'mtspec/src/plot/_' no previously-included directories found matching 'mtspec/src/programs/*' no previously-included directories found matching 'mtspec/src/README' writing manifest file 'mtspec.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-10.5-x86_64/egg running install_lib running build_py running build_ext creating build/bdist.macosx-10.5-x86_64/egg creating build/bdist.macosx-10.5-x86_64/egg/mtspec copying build/lib.macosx-10.5-x86_64-2.7/mtspec/init.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec creating build/bdist.macosx-10.5-x86_64/egg/mtspec/lib copying build/lib.macosx-10.5-x86_64-2.7/mtspec/lib/mtspec.so -> build/bdist.macosx-10.5-x86_64/egg/mtspec/lib copying build/lib.macosx-10.5-x86_64-2.7/mtspec/multitaper.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec creating build/bdist.macosx-10.5-x86_64/egg/mtspec/src creating build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/.DS_Store -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/adaptspec.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/atanh2.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/df_spec.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/dpss.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/dpss_ev.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/dpss_spline.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/eigenft.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/fdis.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/fft.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/ftest.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/ifft.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/jackspec.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/mt_cohe.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/mt_deconv.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/mt_transfer.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/mtspec.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/nearn.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/nnls.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/nsinv.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/nsqi.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/oct_spec.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/psd_reshape.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/pythag.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/qiinv.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/qrfac.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/qsnorm.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/qtdis.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/rsm_eig.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/set_xint.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/sft.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/sine_cohe.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/sine_psd.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/spectra.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/spline.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/sym_fft.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/tinvit.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/trbak1.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/tred1.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/tridib.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/wv_spec.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/wv_spec_to_array.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/xint.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/yule.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src copying build/lib.macosx-10.5-x86_64-2.7/mtspec/src/src/zqrfac.f90 -> build/bdist.macosx-10.5-x86_64/egg/mtspec/src/src creating build/bdist.macosx-10.5-x86_64/egg/mtspec/tests copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/init.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/main.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests creating build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/dpss.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/fstatistics.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/mt_cohe.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/mtspec_pad_with_errors.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/multitaper.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/PASC.dat.gz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/quadratic_multitaper.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/sine_psd.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/single_taper.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/v22_174_series.dat.gz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/data/wv.npz -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/data copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/test_code_formatting.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/test_multitaper.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests copying build/lib.macosx-10.5-x86_64-2.7/mtspec/tests/test_recreatepaperfigures.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec/tests copying build/lib.macosx-10.5-x86_64-2.7/mtspec/util.py -> build/bdist.macosx-10.5-x86_64/egg/mtspec copying build/lib.macosx-10.5-x86_64-2.7/mtspec/VERSION.txt -> build/bdist.macosx-10.5-x86_64/egg/mtspec byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/init.py to init.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/multitaper.py to multitaper.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/init.py to init.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/main.py to main.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/test_code_formatting.py to test_code_formatting.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/test_multitaper.py to test_multitaper.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/tests/test_recreatepaperfigures.py to test_recreatepaperfigures.pyc byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/util.py to util.pyc creating stub loader for mtspec/lib/mtspec.so byte-compiling build/bdist.macosx-10.5-x86_64/egg/mtspec/lib/mtspec.py to mtspec.pyc creating build/bdist.macosx-10.5-x86_64/egg/EGG-INFO copying mtspec.egg-info/PKG-INFO -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO copying mtspec.egg-info/SOURCES.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO copying mtspec.egg-info/dependency_links.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO copying mtspec.egg-info/not-zip-safe -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO copying mtspec.egg-info/requires.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO copying mtspec.egg-info/top_level.txt -> build/bdist.macosx-10.5-x86_64/egg/EGG-INFO writing build/bdist.macosx-10.5-x86_64/egg/EGG-INFO/native_libs.txt creating 'dist/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg' and adding 'build/bdist.macosx-10.5-x86_64/egg' to it removing 'build/bdist.macosx-10.5-x86_64/egg' (and everything under it) Processing mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg removing '/Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg' (and everything under it) creating /Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg Extracting mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg to /Users/ech/anaconda/lib/python2.7/site-packages mtspec 0.3.x is already the active version in easy-install.pth

Installed /Users/ech/anaconda/lib/python2.7/site-packages/mtspec-0.3.x-py2.7-macosx-10.5-x86_64.egg Processing dependencies for mtspec===0.3.x Searching for numpy==1.10.0 Best match: numpy 1.10.0 Adding numpy 1.10.0 to easy-install.pth file

Using /Users/ech/anaconda/lib/python2.7/site-packages Finished processing dependencies for mtspec===0.3.x

echavess commented 8 years ago

Ok. I just re-installed the developer version and ran the test:

python -m mtspec.tests

..............

Ran 14 tests in 7.802s

OK

It seems to be working.

krischer commented 8 years ago

Great :-)

abnarain commented 8 years ago

I have a problem with Debian Jessie

File "test_wave.py", line 319, in main(sys.argv[1:]) File "test_wave.py", line 308, in main mtspec_wigner_ville(np.array(mag),fs,outputfile+'mtspec_wv') File "test_wave.py", line 224, in mtspec_wigner_ville from mtspec import mtspec, wigner_ville_spectrum File "/usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg/mtspec/init.py", line 15, in from .multitaper import mtspec, sine_psd, dpss # NOQA File "/usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg/mtspec/multitaper.py", line 19, in mtspeclib = _load_lib() File "/usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg/mtspec/util.py", line 38, in _load_lib lib = C.CDLL(filename) File "/usr/lib/python2.7/ctypes/init.py", line 365, in init self._handle = _dlopen(self._name, mode) OSError: /usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg/mtspec/lib/mtspec.py: invalid ELF header

Install log : running install running bdist_egg running egg_info writing requirements to mtspec.egg-info/requires.txt writing mtspec.egg-info/PKG-INFO writing top-level names to mtspec.egg-info/top_level.txt writing dependency_links to mtspec.egg-info/dependencylinks.txt reading manifest file 'mtspec.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'mtspec/src/data/' no previously-included directories found matching 'mtspec/src/developing/' no previously-included directories found matching 'mtspec/src/doc/' no previously-included directories found matching 'mtspec/src/examples/' no previously-included directories found matching 'mtspec/src/license/' no previously-included directories found matching 'mtspec/src/Makefile' no previously-included directories found matching 'mtspec/src/makefiles/' no previously-included directories found matching 'mtspec/src/Makefile.win' no previously-included directories found matching 'mtspec/src/matlab/' no previously-included directories found matching 'mtspec/src/plot/_' no previously-included directories found matching 'mtspec/src/programs/*' no previously-included directories found matching 'mtspec/src/README' writing manifest file 'mtspec.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py running build_ext creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/mtspec copying build/lib.linux-x86_64-2.7/mtspec/multitaper.py -> build/bdist.linux-x86_64/egg/mtspec copying build/lib.linux-x86_64-2.7/mtspec/init.py -> build/bdist.linux-x86_64/egg/mtspec creating build/bdist.linux-x86_64/egg/mtspec/src creating build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/tred1.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/yule.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/dpss.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/tridib.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/ftest.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/wv_spec.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/qrfac.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/sine_cohe.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/mtspec.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/spline.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/fdis.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/mt_cohe.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/.DS_Store -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/nsinv.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/nsqi.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/rsm_eig.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/set_xint.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/sym_fft.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/df_spec.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/dpss_ev.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/pythag.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/tinvit.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/eigenft.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/adaptspec.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/ifft.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/qiinv.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/zqrfac.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/qtdis.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/nearn.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/fft.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/mt_transfer.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/wv_spec_to_array.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/atanh2.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/qsnorm.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/trbak1.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/nnls.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/dpss_spline.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/spectra.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/psd_reshape.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/sine_psd.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/sft.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/mt_deconv.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/oct_spec.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/xint.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/src/src/jackspec.f90 -> build/bdist.linux-x86_64/egg/mtspec/src/src copying build/lib.linux-x86_64-2.7/mtspec/VERSION.txt -> build/bdist.linux-x86_64/egg/mtspec creating build/bdist.linux-x86_64/egg/mtspec/lib copying build/lib.linux-x86_64-2.7/mtspec/lib/mtspec.so -> build/bdist.linux-x86_64/egg/mtspec/lib copying build/lib.linux-x86_64-2.7/mtspec/util.py -> build/bdist.linux-x86_64/egg/mtspec creating build/bdist.linux-x86_64/egg/mtspec/tests creating build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/v22_174_series.dat.gz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/dpss.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/mtspec_pad_with_errors.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/wv.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/fstatistics.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/quadratic_multitaper.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/multitaper.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/single_taper.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/mt_cohe.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/sine_psd.npz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/data/PASC.dat.gz -> build/bdist.linux-x86_64/egg/mtspec/tests/data copying build/lib.linux-x86_64-2.7/mtspec/tests/test_recreatepaperfigures.py -> build/bdist.linux-x86_64/egg/mtspec/tests copying build/lib.linux-x86_64-2.7/mtspec/tests/init.py -> build/bdist.linux-x86_64/egg/mtspec/tests copying build/lib.linux-x86_64-2.7/mtspec/tests/main.py -> build/bdist.linux-x86_64/egg/mtspec/tests copying build/lib.linux-x86_64-2.7/mtspec/tests/test_multitaper.py -> build/bdist.linux-x86_64/egg/mtspec/tests copying build/lib.linux-x86_64-2.7/mtspec/tests/test_code_formatting.py -> build/bdist.linux-x86_64/egg/mtspec/tests byte-compiling build/bdist.linux-x86_64/egg/mtspec/multitaper.py to multitaper.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/init.py to init.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/util.py to util.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/tests/test_recreatepaperfigures.py to test_recreatepaperfigures.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/tests/init.py to init.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/tests/main.py to main.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/tests/test_multitaper.py to test_multitaper.pyc byte-compiling build/bdist.linux-x86_64/egg/mtspec/tests/test_code_formatting.py to test_code_formatting.pyc creating stub loader for mtspec/lib/mtspec.so byte-compiling build/bdist.linux-x86_64/egg/mtspec/lib/mtspec.py to mtspec.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying mtspec.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying mtspec.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying mtspec.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying mtspec.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying mtspec.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying mtspec.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating 'dist/mtspec-0.3.x-py2.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing mtspec-0.3.x-py2.7-linux-x86_64.egg removing '/usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg' (and everything under it) creating /usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg Extracting mtspec-0.3.x-py2.7-linux-x86_64.egg to /usr/local/lib/python2.7/dist-packages mtspec 0.3.x is already the active version in easy-install.pth

Installed /usr/local/lib/python2.7/dist-packages/mtspec-0.3.x-py2.7-linux-x86_64.egg Processing dependencies for mtspec==0.3.x Searching for numpy==1.8.2 Best match: numpy 1.8.2 numpy 1.8.2 is already the active version in easy-install.pth

Using /usr/lib/python2.7/dist-packages Finished processing dependencies for mtspec==0.3.x

megies commented 8 years ago

Compiles fine in an up-to-date Anaconda environment in Debian Jessie for me..

krischer commented 8 years ago

@abnarain Maybe you have some previous installation or an installation from another PC? No clue how the ELF header could otherwise be invalid. Also the install log does not show the actual compilation - it must have been compiled before. Can you do a clean installation?

$ pip uninstall mtspec
$ cd /path/to/mtspec
$ git clean -f -d -x  # This will delete ALL files in the mtspec folder not part of the repository!
$ pip install -v .

This should force a recompilation - if it still does not work, please send the log again.

abnarain commented 8 years ago

@krischer You were right, it works now like a charm. Thank you!