Add example gene set for each species

krishnanlab / geneplexus-app-v2

GenePlexus App - backend (cloud functions) and frontend

https://gene-plexus.netlify.app/

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Add example gene set for each species #21

Open ChristopherMancuso opened 5 months ago

ChristopherMancuso commented 5 months ago

For the step that validates the genes, need to have a gene set that is specific to the species chosen.

(Chris) Make species specific example gene sets
(Vince) Add that function to UI

vincerubinetti commented 5 months ago

If you want I can just pick random ones from mygeneset.info that are around 10 genes. That's what I did for the current example jeans.

In my next PR I'll probably do that, at least temporarily until you pick more significant/interesting examples if you want.

ChristopherMancuso commented 5 months ago

that would be great to just grab those from mygeneset.info. I probably will find sets that have really interesting biology at some point, but that will be done after more fixing of the python package happens.

ChristopherMancuso commented 3 weeks ago

Arjun provided a possible example in the google doc bbs genes

vincerubinetti commented 3 weeks ago

I just pushed those bbs genes to #38 as new human example genes. (I believe they're human, from googling)

ChristopherMancuso commented 3 weeks ago

sounds good. For the example gene sets I am going to try to find a single biological process that is well annotated in each species so when explaining the results I don't have to learn vastly different biology for each species. On your end I don't think this changes much as I can just point you to those gene sets once I get them, but since we need a walkthrough/tutorial for the NAR submission I think the example gene sets need to be pretty similar to help me out on that.