Closed ChristopherMancuso closed 1 month ago
I'd imagine this would logically just be another textbox like the main "enter genes" one?
I'd put it at the bottom of the "enter genes" section, under a collapsible button like "manual negatives", with a (?) help tooltip that briefly explains what the package will do automatically if no negatives are manually entered.
Would these also get checked in the "check genes" section? I guess I would need to call /gpz-convert-ids
twice.
In a user workflow, it seems like calling gpz-covert-ids
twice would be needed and you would have to keep track of which is positive and which is negative and upload them both gpz-ml
. I would then have to change gpz-ml
to handle this.
Have a second spot (maybe mostly hidden) where a user can upload genes that will be forced to be negative in training the model (most genes end up not being involved in training). This will be a little tricky to get right possibly so I imagine will be its own PR down the road.