fix: There was another bug upstream in pyranges (issue here) that breaks GTF/GFF parsing. This is a "hot fix" release that simply pins pyranges to 0.0.120 until the bug is fixed upstream in pyranges, or until a more reliable replacement can be found for GTF parsing and interval arithmetic for reference building.
pyroe v0.9.1
fix: There is a bug upstream in pyranges that precludes using
pandas >= 2.0. However, that restriction isn't in place for the pyranges dependencies. This release restricts pyroe to depend on a pandas < 2.0 until this is fixed upstream.
fix: The aliases for the make-spliced+intronic and make-spliced+unspliced subcommands were not working; this release fixes those aliases.
Commits
dc60cad Merge pull request #38 from COMBINE-lab/develop
dfc6769 Merge pull request #37 from DongzeHE/develop
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dependabot[bot]
commented
1 year ago
Bumps pyroe from 0.9.0 to 0.9.2.
Release notes
Sourced from pyroe's releases.
Commits
dc60cadMerge pull request #38 from COMBINE-lab/developdfc6769Merge pull request #37 from DongzeHE/develop5a47d35fix: fix pyranges versionedb2177fix: fix pyranges version as the new version is broken9b81eaeMerge pull request #36 from COMBINE-lab/developfa62eb6Restrict pandas version77cb6b3make aliases set the name of the parent subcommand711f528Merge pull request #35 from COMBINE-lab/mainYou can trigger a rebase of this PR by commenting
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