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kristinbranson / APT

Animal Part Tracker
GNU General Public License v3.0
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APT landmarks in JAABA #340

Closed gainbrew closed 3 years ago

gainbrew commented 3 years ago

Hello,

I wasn't sure if this should be posted here or in the JAABA Github. I am attempting to train a classifier in JAABA using APT tracking data. I ran into an issue where the dots that represent each APT landmark are only showing up for the 1st animal. I have 12 targets, and it does appear that JAABA is able to train on features generated from the landmarks for all animals, but I am not actually able to visualize the dots.

Thanks, Ben

gainbrew commented 3 years ago

To clarify, I can confirm that the .trk file called in this JAABA project contains tracking information for all targets.

mkabra commented 3 years ago

Hi Ben,

Right now, JAABA only shows the dots for the animal that is currently selected in JAABA. Do the dots don't show up even when you switch animals?

Mayank

On Thu, Aug 27, 2020 at 12:04 AM gainbrew notifications@github.com wrote:

Hello,

I wasn't sure if this should be posted here or in the JAABA Github. I am attempting to train a classifier in JAABA using APT tracking data. I ran into an issue where the dots that represent each APT landmark are only showing up for the 1st animal. I have 12 targets, and it does appear that JAABA is able to train on features generated from the landmarks for all animals, but I am not actually able to visualize the dots.

Thanks, Ben

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gainbrew commented 3 years ago

Hi Mayank,

That's correct. When switching targets the dots don't appear and I still see them on the original animal.

Thanks, Ben

mkabra commented 3 years ago

I re-checked and actually the dots should be visible for all animals even if they are not selected. I presume you did the usual step of restarting Matlab and that also didn't fix it. Do you see any errors printed out in the Matlab's Command Window when you load the project or switch animals? If not, can you send me an example movie file, trx file, APT trk file, and the JAABA project file? I don't think I need the APT project file but if I do I'll ask for it.

Mayank

On Fri, Aug 28, 2020 at 6:47 PM gainbrew notifications@github.com wrote:

Hi Mayank,

That's correct. When switching targets the dots don't appear and I still see them on the original animal.

Thanks, Ben

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gainbrew commented 3 years ago

Sorry for the delay, our MATLAB license expired. I didn't see anything printed in the command window when loading the project or when switching animals. Below is a link for all requested files, let me know if anything further is needed. Thanks!

https://drive.google.com/file/d/1-VZGSEEngXFI3zvhS-ZyHkCggGTkDwzV/view?usp=sharing

mkabra commented 3 years ago

Ok yeah, there was a bug because of which the APT trk points were plotted outside the frame. I've fixed the bug and pushed it to github. Try it out.

Mayank

On Fri, Sep 11, 2020 at 12:11 AM gainbrew notifications@github.com wrote:

Sorry for the delay, our MATLAB license expired. I didn't see anything printed in the command window when loading the project or when switching animals. Below is a link for all requested files, let me know if anything further is needed. Thanks!

https://drive.google.com/file/d/1-VZGSEEngXFI3zvhS-ZyHkCggGTkDwzV/view?usp=sharing https://urldefense.com/v3/__https://drive.google.com/file/d/1-VZGSEEngXFI3zvhS-ZyHkCggGTkDwzV/view?usp=sharing__;!!Eh6p8Q!SCX534Tuyc4kRWPOBlJJCwFQ0mpdU3B14arJeMOdw4vcPYS5pg0lgJS461DKtTEU-Vg$

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gainbrew commented 3 years ago

That did the trick, thanks so much!