bjarthur
commented
11 years ago difficult without the data files. a description of the sequence of events leading up to the crash would also be nice.
On Tue, Jan 29, 2013 at 07:12:32AM -0800, mkabra wrote:
Vivek at UT Southwestern got the following errors. Ben, can you figure out the bug from the error report? Else I'll ask for the experiments to recreate the error.
In JAABAPlot>(parfor body) at 1182 In parallel_function>make_general_channel/channel_general at 870 In remoteParallelFunction at 30 Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Skipping classifier Run_v1(20130107T121529) for experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f, scores already computed Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 2 Skipping classifier Run_v1(20130107T121529) for experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f, scores already computed Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 2 Skipping classifier Run_v1(20130107T121529) for experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f, scores already computed Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 2 Skipping classifier Run_v1(20130107T121529) for experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f, scores already computed Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 2 Converting window feature names to ComputeWindowFeatures parameters... Loading labels for /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f Loading labels for /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f Converting window feature names to ComputeWindowFeatures parameters... Loading labels for /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f Loading labels for /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f Converting window feature names to ComputeWindowFeatures parameters... Loading labels for /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f Loading labels for /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f Converting window feature names to ComputeWindowFeatures parameters... Loading labels for /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f Loading labels for /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f Loading trx for experiment WT001G7N5F20222M-22-PSY-3.mov.f Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f Caching labels for experiment WT001G7N5F20222M-22-PSY-3.mov.f, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f, flies 1 Classifying flies 1... Loading trx for experiment WT001G7N5F20436M-36-PSY.mov.f Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f Caching labels for experiment WT001G7N5F20436M-36-PSY.mov.f, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f, flies 1 Classifying flies 1... Loading trx for experiment WT001G6N50261M-61-PSY.mov.f Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f Caching labels for experiment WT001G6N50261M-61-PSY.mov.f, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f, flies 1 Classifying flies 1... Loading trx for experiment WT001G6N50267M-7-PSY.mov.f Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f Caching labels for experiment WT001G6N50267M-7-PSY.mov.f, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f, flies 1 Classifying flies 1... 35% done. 67% done. 65% done. 31% done. 69% done. 100% done. Classifying flies 2... 31% done. 100% done. Classifying flies 2... 32% done. 62% done. 100% done. Classifying flies 2... 30% done. 62% done. 63% done. 93% done. 100% done. Classifying flies 2... 61% done. 93% done. 100% done. 95% done. 100% done. 67% done. 100% done. 91% done. 100% done. Index exceeds matrix dimensions.
Error in JAABAPlot>BehaviorTimeSeries_Callback (line 2708) score_file2=handles.scorefiles{handles.behaviorvalue2};
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorTimeSeries_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Index exceeds matrix dimensions.
Error in JAABAPlot>BehaviorBarChart_Callback (line 2419) score_file2=handles.scorefiles{handles.behaviorvalue2};
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorBarChart_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Index exceeds matrix dimensions.
Error in JAABAPlot>BehaviorBarChart_Callback (line 2419) score_file2=handles.scorefiles{handles.behaviorvalue2};
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorBarChart_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Warning: Error using load Unable to read file /home/vkumar/Videos/TrainingSmall/LL2/5WT001G7N5F20304M-4-PSY.mov.f/scores_Walk_v1.mat: No such file or directory.
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
In JAABAPlot>(parfor body) at 1182 In parallel_function>make_general_channel/channel_general at 870 In remoteParallelFunction at 30 Warning: Error using load Unable to read file /home/vkumar/Videos/TrainingSmall/LL1/8WT001G7N5F20303M-3-PSY/scores_Walk_v1.mat: No such file or directory.
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
In JAABAPlot>(parfor body) at 1182 In parallel_function>make_general_channel/channel_general at 870 In remoteParallelFunction at 30 Warning: Error using load Unable to read file /home/vkumar/Videos/TrainingSmall/LL1/WT001G5N50190-30M-2/scores_Walk_v1.mat: No such file or directory.
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
In JAABAPlot>(parfor body) at 1182 In parallel_function>make_general_channel/channel_general at 870 In remoteParallelFunction at 30 Warning: Error using load Unable to read file /home/vkumar/Videos/TrainingSmall/LL2/11WT001G7N5F20304M-4-PSY.mov.f/scores_Walk_v1.mat: No such file or directory.
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
In JAABAPlot>(parfor body) at 1182 In parallel_function>make_general_channel/channel_general at 870 In remoteParallelFunction at 30 Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Reading classifier parameters... Skipping classifier Walk_v1(20130107T123639) for experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f, scores already computed All classifiers have been run on experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20222M-22-PSY-3.mov.f. Exiting. Skipping classifier Walk_v1(20130107T123639) for experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f, scores already computed All classifiers have been run on experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50267M-7-PSY.mov.f. Exiting. Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 1 Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 1 Skipping classifier Walk_v1(20130107T123639) for experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f, scores already computed All classifiers have been run on experiment /home/vkumar/Videos/TrainingSmall/LL7/WT001G7N5F20436M-36-PSY.mov.f. Exiting. Converting window feature names to ComputeWindowFeatures parameters... Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 1 Converting window feature names to ComputeWindowFeatures parameters... Skipping classifier Walk_v1(20130107T123639) for experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f, scores already computed All classifiers have been run on experiment /home/vkumar/Videos/TrainingSmall/LL8/WT001G6N50261M-61-PSY.mov.f. Exiting. Loading labels for /home/vkumar/Videos/TrainingSmall/LL1/8WT001G7N5F20303M-3-PSY Loading labels for /home/vkumar/Videos/TrainingSmall/LL1/8WT001G7N5F20303M-3-PSY Loading trx for experiment 8WT001G7N5F20303M-3-PSY Processing 1 classifiers together: /home/vkumar/JAABA/perframe/classifier_Walk_v1.mat Getting list of window features... Classifier 1 Converting window feature names to ComputeWindowFeatures parameters... Converting window feature names to ComputeWindowFeatures parameters... Loading labels for /home/vkumar/Videos/TrainingSmall/LL2/5WT001G7N5F20304M-4-PSY.mov.f Loading labels for /home/vkumar/Videos/TrainingSmall/LL2/5WT001G7N5F20304M-4-PSY.mov.f Loading trx for experiment 5WT001G7N5F20304M-4-PSY.mov.f Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL1/8WT001G7N5F20303M-3-PSY Caching labels for experiment 8WT001G7N5F20303M-3-PSY, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL1/8WT001G7N5F20303M-3-PSY, flies 1 Loading labels for /home/vkumar/Videos/TrainingSmall/LL1/WT001G5N50190-30M-2 Loading labels for /home/vkumar/Videos/TrainingSmall/LL1/WT001G5N50190-30M-2 Loading trx for experiment WT001G5N50190-30M-2 Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL1/WT001G5N50190-30M-2 Caching labels for experiment WT001G5N50190-30M-2, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL1/WT001G5N50190-30M-2, flies 1 Loading labels for /home/vkumar/Videos/TrainingSmall/LL2/11WT001G7N5F20304M-4-PSY.mov.f Loading labels for /home/vkumar/Videos/TrainingSmall/LL2/11WT001G7N5F20304M-4-PSY.mov.f Loading trx for experiment 11WT001G7N5F20304M-4-PSY.mov.f Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL2/11WT001G7N5F20304M-4-PSY.mov.f Caching labels for experiment 11WT001G7N5F20304M-4-PSY.mov.f, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL2/11WT001G7N5F20304M-4-PSY.mov.f, flies 1 Reading trx info for experiment /home/vkumar/Videos/TrainingSmall/LL2/5WT001G7N5F20304M-4-PSY.mov.f Caching labels for experiment 5WT001G7N5F20304M-4-PSY.mov.f, flies 1 Loading per-frame data for /home/vkumar/Videos/TrainingSmall/LL2/5WT001G7N5F20304M-4-PSY.mov.f, flies 1 Classifying flies 1... Classifying flies 1... Classifying flies 1... Classifying flies 1... 32% done. 37% done. 76% done. 37% done. 64% done. 74% done. 100% done. Classifying flies 2... 100% done. Classifying flies 2... 74% done. 100% done. Classifying flies 2... 96% done. 100% done. Classifying flies 2... 32% done. 32% done. 32% done. 37% done. 64% done. 97% done. 63% done. 95% done. 64% done. 74% done. 100% done. 100% done. 100% done. 96% done. 100% done. Attempted to access time_base(0); index must be a positive integer or logical.
Error in JAABAPlot>BehaviorTimeSeries_Callback (line 2808) if(time_base(end)>300)
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorTimeSeries_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Reply to this email directly or view it on GitHub: https://github.com/kristinbranson/JAABA/issues/164
mkabra
Vivek at UT Southwestern got the following errors. Ben, can you figure out the bug from the error report? Else I'll ask for the experiments to recreate the error.
Error in JAABAPlot>BehaviorTimeSeries_Callback (line 2708) score_file2=handles.scorefiles{handles.behaviorvalue2};
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorTimeSeries_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Index exceeds matrix dimensions.
Error in JAABAPlot>BehaviorBarChart_Callback (line 2419) score_file2=handles.scorefiles{handles.behaviorvalue2};
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorBarChart_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Index exceeds matrix dimensions.
Error in JAABAPlot>BehaviorBarChart_Callback (line 2419) score_file2=handles.scorefiles{handles.behaviorvalue2};
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorBarChart_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
Warning: Error using load Unable to read file /home/vkumar/Videos/TrainingSmall/LL2/5WT001G7N5F20304M-4-PSY.mov.f/scores_Walk_v1.mat: No such file or directory.
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
Error in JAABAPlot>(parfor body) (line 1180) behavior_data=load(fullfile(handlesexperimentlist{ge},handles.scorefiles{c}));
Error in parallel_function>make_general_channel/channel_general (line 870) O = F(C{:});
Error in remoteParallelFunction (line 30) out = distcompMakeByteBufferHandle(distcompserialize(feval(channel, channelArgs{:})));
Error in JAABAPlot>BehaviorTimeSeries_Callback (line 2808) if(time_base(end)>300)
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in JAABAPlot (line 39) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)JAABAPlot('BehaviorTimeSeries_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback