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krlmlr / r-appveyor

Tools for using R with AppVeyor (https://appveyor.com)
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Add support for BiocCheck #65

Closed richierocks closed 5 years ago

richierocks commented 8 years ago

For checking packages to be submitted to Bioconductor, as well as R CMD check, you also need to run R CMD BiocCheck. See:

https://www.bioconductor.org/packages/release/bioc/html/BiocCheck.html

The Vignette gives the setup and usage details.

It would be great if you could run BiocCheck by specifying some settings in the appveyor.yml. (Since most of the checks aren't Bioconductor-specific, this is pretty useful even if you only develop for CRAN.)

You can install the BiocCheck package using:

build_script:
 - travis-tool.sh install_bioc BiocCheck

I can't see a way to actually call BiocCheck and parse the results.

(It's also not totally clear to me whether this issue belongs here or in @craigcitro's r-travis project.)

See also https://github.com/metacran/r-builder/issues/47

krlmlr commented 8 years ago

The r-travis project is obsolete, I'm working on integrating the relevant scripts in this repository (#74).

krlmlr commented 5 years ago

BioConductor support added by @LiNk-NY (thanks!), please open a new issue if necessary.