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krumsieklab / maplet

R statistical toolbox for metabolomics
GNU General Public License v3.0
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add a function that converts different metabolite IDs given a lookup table #64

Open KelseyChetnik opened 3 years ago

KelseyChetnik commented 3 years ago

In GitLab by @kelsey.chetnik on Jun 15, 2020, 12:19

Based on external file (e.g. Metabolon look-up file)

KelseyChetnik commented 3 years ago

In GitLab by @elibene on Jul 10, 2020, 09:42

We can start from the Metabolon lookup table we have already (shareddata/metabolon_lookup_table_20190508.xlsx) to create a user-defined ID mapping (eg. from HMDB to KEGG or from KEGG to PUBCHEM). The lookup table will have to be integrated and expanded with new data types and annotations as we go.