atks
commented
3 years ago sorry, just realized an error that I did not investigate before.
Closed atks closed 3 years ago
atks
commented
3 years ago sorry, just realized an error that I did not investigate before.
Can you help here? This is the log.
(NGSpeciesID) cavs@shangri-la:~$ sudo pip install NGSpeciesID Processing /root/.cache/pip/wheels/3d/dc/a9/bcf6c04f5e5d51e228683737da3a567ab0ad2ec9d6bcce603b/NGSpeciesID-0.1.1.1-py2.py3-none-any.whl Collecting parasail==1.1.11 Using cached parasail-1.1.11.tar.gz (46 kB) Requirement already satisfied: edlib>=1.1.2 in /usr/local/lib/python3.8/dist-packages (from NGSpeciesID) (1.3.8.post2) Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from parasail==1.1.11->NGSpeciesID) (1.17.4) Building wheels for collected packages: parasail Building wheel for parasail (setup.py) ... error ERROR: Command errored out with exit status 1: command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-8ano6duc/parasail/setup.py'"'"'; file='"'"'/tmp/pip-install-8ano6duc/parasail/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nefm69uc cwd: /tmp/pip-install-8ano6duc/parasail/ Complete output (121 lines): running bdist_wheel parasail/libparasail.so not found, attempting to build Downloading latest parasail master Unzipping parasail master archive fixing executable bits after unzipping Unable to find parasail configure script Prepending /usr/bin to PATH PATH=/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin Running autoreconf -fi from ./parasail-master b'This is perl 5, version 30, subversion 0 (v5.30.0) built for x86_64-linux-gnu-thread-multi' b'm4 (GNU M4) 1.4.18' b'autoconf (GNU Autoconf) 2.69' b'automake (GNU automake) 1.16.1' libtool not found b'autoreconf (GNU Autoconf) 2.69' sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied sh: 1: ./version.sh: Permission denied configure.ac:115: installing 'build-aux/compile' configure.ac:74: installing 'build-aux/config.guess' configure.ac:74: installing 'build-aux/config.sub' configure.ac:66: installing 'build-aux/install-sh' configure.ac:66: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' autoreconf -fi exited with return code 0 configuring parasail in directory ./parasail-master error: [Errno 13] Permission denied: './configure'
ERROR: Failed building wheel for parasail Running setup.py clean for parasail Failed to build parasail Installing collected packages: parasail, NGSpeciesID Running setup.py install for parasail ... error ERROR: Command errored out with exit status 1: command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-8ano6duc/parasail/setup.py'"'"'; file='"'"'/tmp/pip-install-8ano6duc/parasail/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-zhc75dkg/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.8/parasail cwd: /tmp/pip-install-8ano6duc/parasail/ Complete output (7 lines): running install parasail/libparasail.so not found, attempting to build Archive 'parasail-master.zip' already downloaded Archive 'parasail-master.zip' already unzipped to /tmp/pip-install-8ano6duc/parasail fixing executable bits after unzipping configuring parasail in directory ./parasail-master error: [Errno 13] Permission denied: './configure'
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-8ano6duc/parasail/setup.py'"'"'; file='"'"'/tmp/pip-install-8ano6duc/parasail/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-zhc75dkg/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.8/parasail Check the logs for full command output.