Is there any specific reason to use the outdated medaka==0.11.5 and openblas==0.3.3 versions?

ksahlin / NGSpeciesID

Reference-free clustering and consensus forming of long-read amplicon sequencing

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Is there any specific reason to use the outdated medaka==0.11.5 and openblas==0.3.3 versions? #17

Closed Coppini closed 2 years ago

Coppini commented 2 years ago

I tried using NGSpeciesID with more recent versions (simply installing medaka and openblas without setting the version) and it seemed to work fine. I did get slightly different outputs, but I'm assuming that has to do with medaka improvements from 0.11.5 to 1.5.0.

Was there any specific reason to tie these two dependencies to these two specific versions?

ksahlin commented 2 years ago

There was really no reason besides we verified that the installation worked on our machines using these versions. The openblas was a package required to make medaka work on iOS, for reference see here. It is possible that they have removed/relaxed this requirement.