Hi there!
This seems like a very cool tool. I was using isONclust before and really liked it but ran against issues which apparently were adressed in NGSpeciesID! When I tried to install it however it did't work right out of the box.
I tried running the conda install as specified in the github repo on an EC2 instance running Ubuntu 20.04.2 LTS (GNU/Linux 5.4.0-1038-aws x86_64).
However, when running pip install NGSpeciesID I get the error below. The basic issue here was that linux was missing some dependencies to build parasail properly. Upon installing these packages (m4, autoconf,automake,libtool,autorecong) with sudo apt install the pip install worked perfectly (though I don't think you necessarily need all of them). I thought it might be good to include this as a requirement in the readme of this repo. Excited to try it out!
Hi there! This seems like a very cool tool. I was using isONclust before and really liked it but ran against issues which apparently were adressed in NGSpeciesID! When I tried to install it however it did't work right out of the box.
I tried running the conda install as specified in the github repo on an EC2 instance running Ubuntu 20.04.2 LTS (GNU/Linux 5.4.0-1038-aws x86_64).
conda create -n NGSpeciesID python=3.6 pip conda activate NGSpeciesID pip install NGSpeciesID
However, when running pip install NGSpeciesID I get the error below. The basic issue here was that linux was missing some dependencies to build parasail properly. Upon installing these packages (m4, autoconf,automake,libtool,autorecong) with sudo apt install the pip install worked perfectly (though I don't think you necessarily need all of them). I thought it might be good to include this as a requirement in the readme of this repo. Excited to try it out!