ksahlin isONclust issues

ksahlin / isONclust

De novo clustering of long transcript reads into genes

GNU General Public License v3.0

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Error on write_fastq

#25 NHoang98 opened 1 month ago
7
Working with huge datasets

#24 timyerg closed 5 months ago
7
Memory Problems with ONT Data

#23 eprdz opened 10 months ago
7
Is it possible to use isOnclust on multiple samples?

#22 DesmondoDekker opened 2 years ago
4
RE: IsONclust on ONY; spot died with <Signals.SIGILL: 4>.

#21 Malabady opened 2 years ago
2
About the read order in each cluster in the final_clusters.tsv file

#20 lauraht closed 2 years ago
6
homopolymer compression?

#19 nextgenusfs opened 2 years ago
4
Is it possible to add a “--shortname" option for isONclust to output the read name with “the read id only”?

#18 lauraht opened 2 years ago
1
Is it possible to use isONclust to help determine whether two reads came from the same isoform?

#17 lauraht opened 3 years ago
15
ValueError: min() arg is an empty sequence

#16 JoshLoecker closed 3 years ago
8
pipeline not an option

#15 danessel closed 3 years ago
1
Dependencies for running --medaka argument

#14 Alxdu closed 3 years ago
2
Added support for --k [4-9]

#13 jkomyno closed 3 years ago
0
TypeError with simulated fastq data

#12 jkomyno closed 3 years ago
1
Usage of --consensus to generate a non redundant fasta file with unique transcript sequences

#11 ALSP6OCT closed 3 years ago
8
struct.error

#10 huangziyan11111 closed 4 years ago
7
Version mismatch with pypi repos

#9 mptrsen opened 4 years ago
1
Stranded vs unstranded sequencing

#8 wenzelm closed 4 years ago
2
error: too few arguments

#7 srbehera closed 4 years ago
3
isONclust: error: too few arguments

#6 emaleckova closed 5 years ago
2
Incorporation of isONclust to a currently used pipeline (Iso-Seq, PacBio)

#5 emaleckova closed 3 years ago
5
isonclust command for ONT data

#4 marisalim closed 4 years ago
19
get_sorted_fastq_for_cluster.py, line 124 // p_no_error_in_kmers = 1.0 - exp_errors_in_kmers/ float((len(seq) - k +1))

#3 uqvirg closed 5 years ago
4
Add script to create separate fasta for each cluster

#2 ksahlin closed 5 years ago
1
Threads error

#1 vineeth-s closed 5 years ago
1